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Menzel Inc kaiju pipeline v1 9 0
Kaiju Pipeline V1 9 0, supplied by Menzel Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/kaiju/1+2+9+kaiju+v/pm42243452-127-18-21
Average 86 stars, based on 1 article reviews
kaiju pipeline v1 9 0 - by Bioz Stars, 2026-10
86/100 stars

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Article Title: Unveiling Marine Vesicle Uptake in Vibrio spp: Taxonomic and Environmental Insights.
Article Snippet: The taxonomy of those reads whose identity compared with the V. coralliilyticus strain Vic‐ Oc‐068 DNA was below 70% were compared with the nr_uk database using Kaiju (‐E 0.00001 ‐a greedy) (Menzel et al. 2016).

Sequencing:

Article Title: Elucidating the Functional and Taxonomic Diversity of Soil Microbial Communities From Three Commercial Soybean Farms in South Africa
Article Snippet: After preprocessing, the sequences were imported into R/RStudio version 4 (R Core Team ) and the (.tsv) were used for downstream analysis in R using the tidyverse, vegan, and ggplot2 packages. .. Taxonomic classification of the metagenomic reads was performed using Kaiju (Menzel et al. ), a protein‐level taxonomic classifier that assigns reads to taxa based on translated sequence similarity searches against reference microbial databases. ..

Article Title: Elucidating the Functional and Taxonomic Diversity of Soil Microbial Communities From Three Commercial Soybean Farms in South Africa.
Article Snippet: After preprocessing, the sequences were imported into R/RStudio version 4 (R Core Team 2024) and the (.tsv) were used for downstream analysis in R using the tidyverse, vegan, and ggplot2 packages. .. Taxonomic classification of the metagenomic reads was performed using Kaiju (Menzel et al. 2016), a protein- level taxonomic classifier that assigns reads to taxa based on translated sequence similarity searches against reference microbial databases. ..

Metagenomics:

Article Title: Metagenomic insights into the microbial diversity and functional potential of geothermal anomaly sites of Deception Island, Antarctica: a preliminary exploration
Article Snippet: 1 Karen M. Swindler Department of Chemical and Biological Engineering, South Dakota Mines, Rapid City, SD 57701, USA 2 2-Dimensional Materials for Biofilm Engineering, Science and Technology Center, South Dakota Mines, Rapid City, SD 57701, USA 3 Centro de Investigación de Estudios Avanzados del Maule (CIEAM), Vicerrectoría de Investigación y Postgrado, Universidad Católica del Maule, Talca, Chile 4 Centro Regional de Estudios Ambientales (CREA), Universidad Católica de la Santísima Concepción, Concepción, Chile 5 Functional Polysaccharides Research Group, Instituto de Ciencias Aplicadas, Facultad de Ingeniería, Universidad Autónoma de Chile, Sede Talca, Talca, Chile 6 Chemistry, Biology, and Health Sciences, South Dakota Mines, Rapid City, SD 57701, USA Abstract Deception Island is an active volcanic area in the South Shetland Island, Antarctica.. Due to its geophysical and geothermal setting and extreme conditions, it forms a unique ecological niche for extremophilic microorganisms.. Previous studies reported several findings in terms of new microbial genera; however, whole metagenome approach was not applied to capture the novel microbial taxa and functional potential in this ecosystem.



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Menzel Inc kaiju pipeline v1 9 0
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https://www.bioz.com/product/kaiju/1+2+9+kaiju+v/pm42243452-127-18-21
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